V rámci výzkumného zaměření výzkumné základny a jednotlivých projektů podporovaných z různých zdrojů spolupracuje FVZ s:

• Military Medical Academy, Bulgaria
• CRSSA – Centre de Recherches du Service de Santé des Armées, La Tronches, France
• Medical Academy of Bundeswehr, Munich, Deutschland
• Faculty of Military Medicine, Lódž, Poland
• FOI – National Defence Research Establishment, Umea, Sweden
• GlaxoSmithKline, Belgium
• NRC Ottawa, Canada
• WHO, European Observatory, Copenhagen, Denmark
• Max Planck Inst., Berlin, Deutschland
• Universitat Leipzig, Deutschland
• King´s Fund College, London, England
• Rowett Research Institute, Aberdeen, England
• Institute of Hygiene and Epidemiology, Warsaw, Poland
• Comenius Univ., Dept. of Epidemiology, Bratislava, Slovak Republic
• UMEA University, Sweden
• Basle Institute for Immunology, Basle, Switzerland
• Djikzigt Hospital, Rotterdam, Netherland
• TNO, Rijswijk, Netherland
• Scranton University, USA
• ASA Portland, USA
• Aventis Pasteur MSD, Lyon, France
• Wyeth, New Jersey, USA
• University of Nevada – Medical School, USA
• AIHA (American Int. Health Alliance), USA
• AUPHA (Association of University Programmes in Health Administration), USA
• U.S. Medical Research Institute of Chemical Defence, Maryland, USA
• Walter Reed Army Institute of Research, Washinghton, USA
• BAXTER,Vienna, Austria